Package: spOccupancy
Type: Package
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
        Models
Version: 0.8.1
Authors@R: c(person("Jeffrey", "Doser", role=c("aut", "cre"), email="jwdoser@ncsu.edu"), person("Andrew", "Finley", role = c("aut")), person("Marc", "Kery", role = c('ctb')))
Author: Jeffrey Doser [aut, cre], Andrew Finley [aut], Marc Kery [ctb]
Maintainer: Jeffrey Doser <jwdoser@ncsu.edu>
Description: Fits single-species, multi-species, and integrated
        non-spatial and spatial occupancy models using Markov Chain
        Monte Carlo (MCMC). Models are fit using Polya-Gamma data
        augmentation detailed in Polson, Scott, and Windle (2013)
        <doi:10.1080/01621459.2013.829001>. Spatial models are fit
        using either Gaussian processes or Nearest Neighbor Gaussian
        Processes (NNGP) for large spatial datasets. Details on NNGP
        models are given in Datta, Banerjee, Finley, and Gelfand (2016)
        <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and
        Banerjee (2022) <doi:10.18637/jss.v103.i05>. Provides
        functionality for data integration of multiple single-species
        occupancy data sets using a joint likelihood framework. Details
        on data integration are given in Miller, Pacifici, Sanderlin,
        and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on
        single-species and multi-species models are found in MacKenzie,
        Nichols, Lachman, Droege, Royle, and Langtimm (2002)
        <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and
        Dorazio and Royle <doi:10.1198/016214505000000015>,
        respectively.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://www.doserlab.com/files/spoccupancy-web,
        https://groups.google.com/g/spocc-spabund-users,
        https://github.com/ecoverseR/spOccupancy
BugReports: https://github.com/ecoverseR/spOccupancy/issues
Depends: R (>= 3.5.0)
Imports: stats, coda, abind, RANN, reformulas, foreach, doParallel,
        spAbundance, methods
Suggests: testthat
NeedsCompilation: yes
Config/pak/sysreqs: cmake make
Repository: https://ecoverser.r-universe.dev
Date/Publication: 2026-06-24 14:16:02 UTC
RemoteUrl: https://github.com/ecoverser/spoccupancy
RemoteRef: HEAD
RemoteSha: c837a1500de53be27d70ee467cf3d2704023d028
Packaged: 2026-06-24 16:20:46 UTC; root