Package: ubms
Version: 1.2.9
Date: 2026-04-22
Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Authors@R: person("Ken", "Kellner", email="contact@kenkellner.com", 
                  role=c("cre","aut"))
Depends: R (>= 3.4.0), unmarked
Imports: ggplot2 (>= 2.0.0), gridExtra, loo, Matrix (>= 1.5-0),
        methods, pbapply, Rcpp (>= 0.12.0), reformulas, rlang,
        RSpectra, rstan (>= 2.26.0), rstantools (>= 2.0.0), stats
Suggests: knitr, raster, rmarkdown, terra, testthat
VignetteBuilder: knitr
Description: Fit Bayesian hierarchical models of animal abundance and
        occurrence via the 'rstan' package, the R interface to the
        'Stan' C++ library. Supported models include single-season
        occupancy, dynamic occupancy, and N-mixture abundance models.
        Covariates on model parameters are specified using a
        formula-based interface similar to package 'unmarked', while
        also allowing for estimation of random slope and intercept
        terms. References: Carpenter et al. (2017)
        <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011)
        <doi:10.18637/jss.v043.i10>.
License: GPL (>=3)
URL: https://ecoverseR.github.io/ubms/
BugReports: https://github.com/ecoverseR/ubms/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppArmadillo (>=
        0.9.300.2.0), RcppEigen (>= 0.3.3.3.0), rstan (>= 2.26.0),
        StanHeaders (>= 2.26.0), RcppParallel (>= 5.0.2)
SystemRequirements: GNU make
Collate: 'RcppExports.R' 'submodel.R' 'response.R' 'inputs.R' 'fit.R'
        'posterior_predict.R' 'posterior_linpred.R' 'fitted.R' 'gof.R'
        'occu.R' 'colext.R' 'missing.R' 'distsamp.R' 'fitlist.R'
        'kfold.R' 'occuTTD.R' 'multinomPois.R' 'occuRN.R' 'pcount.R'
        'loglik.R' 'mb_chisq.R' 'plot_effects.R' 'plot_posteriors.R'
        'predict.R' 'priors.R' 'ranef.R' 'residuals.R' 'spatial.R'
        'stanmodels.R' 'test-helpers.R' 'ubms-package.R'
        'ubmsFit-methods.R' 'ubmsFitList-methods.R' 'umf.R' 'utils.R'
Config/pak/sysreqs: make
Repository: https://ecoverser.r-universe.dev
Date/Publication: 2026-04-22 17:14:16 UTC
RemoteUrl: https://github.com/ecoverser/ubms
RemoteRef: HEAD
RemoteSha: c75d0df545a871d913b3a20a07f886a0d1e78020
NeedsCompilation: yes
Packaged: 2026-06-21 09:19:01 UTC; root
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact@kenkellner.com>